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admixture_pie_chart_map_tutorial

Tutorial for visualising admixture on a map

american_shad_genome

De Novo Assembly and Annotation of the American Shad Genome

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

bamsifter

normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth

bobs-bioinformatics

bwa_readcount

Pipeline to assemble reads to a reference with BWA and calculate read counts

camel_genomics

Code for the analysis of 25 Camel genomes

circular_biology

This repository includes tutorial material for the The Pill Bug Orientation Lab

denovo_transcriptome

Lachnolaimus_maximus Transcriptome

fitaklab

The Fitak Integrative Genomics Laboratory

gst_demographic_history

The code here is to reconstruct the green sea turtle's demographic history

housewren_transcriptome

The de novo assembly of the house wren (Troglodytes aedon) transcriptome and SNP identification

mexican_wolf_inbreeding

An analysis of inbreeding in Mexican wolves using a genome-wide set of SNP markers

mexican_wolf_snps

The repository contains code for the analysis of the Mexican wolf SNP data

misc_utils

A collection of Bash and Python scripts to perform various small tasks

morinlab.github.io

Build a lab website in minutes to showcase your research!

mtb_mgrast

Identifying magneto tactic bacteria in microbiome projects form the MGRAST database

raisd

RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors

retina_rna-seq

The code for analysis of the trout retina RNA-seq data

sisbid_machine_learning

Summer Institute in Statistics for Big Data Workshop: Supervised Machine Learning

snpgenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data