reslp Goto Github PK

2020-03-17-unigraz

alignment-viz

processing and python scripts for creating visualized alignments

annocomba

Automated genome annotation pipeline combining MAKER and funannotate with singularity and snakemake

bash-oneliner

A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

binner

Run multiple metagenome filtering programs using Docker containers

blog

concat

python script to create concatenated FASTA files for phylogenetic analyses from single locus alignments. concat.py replaces most scripts in the phylo-scripts repository

correlate

R package for character correlation analyses with phylogenetic trees

demogenas

democratizing genome assembly

dockerfiles

A collection of Dockerfiles for different containers I use.

funannotate

Eukaryotic Genome Annotation Pipeline

funannotate-docker

Docker container for the funannotate genome annotation pipeline

genomics

some scripts I use in my genomic data analysis workflow

haikubuilddocker

Docker image setup for building Haiku operating system.

homestack

Settings and installation instructions for my rpis at home

immediate-submit

Immediate_submit script used in many of our snakemake HPC pipelines

iqtreegui

iqtreeGUI - A graphical user interface for IQ-TREE

lfs-cazy-comparative

All code for the comparative genome analyses performed in the Resl et. al (2022) NComms paper

lichen_genomics

course material for the workshop on lichen genomics 2 in graz

mitochondrial_genome_assembly

mitocomp

nimbio

phylo-scripts

python scripts for phylogenetics

phylociraptor

rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference

quickblast

Script to create a blastdb and quickly blast sequences against it

reproducibility-workshop

Materials for the course "Reproducibility in Bioinformatics"

reslp.github.io

Homepage

saccharis

Improve functional predictions of uncharacterized sequences for any CAZyme or CBM family

saccharis-docker

smsi-funannotate

Funannotate Snakemake Singularity Pipeline