Comments (3)
djarecka
commented on September 18, 2024
have the same error
from containers.
yarikoptic
commented on September 18, 2024
Thank you! I will have a look tomorrow - something should've gone wrong I guess
from containers.
yarikoptic
commented on September 18, 2024
Thank you @jbwexler for alerting and @djarecka for confirming the issue. Update dataset and try again now.
The reason was -- the partition docker uses for its .cache got filled up by it! That lead singularity (still using 2.6 there) to start puking all kinds of errors but script itself proceeded as nothing bad happened. Unfortunately in a rush to address the issue I just removed the cache so didn't drill down to fix situation so it would not manifest in the future. Filed a dedicated #66 for that, and since AFAIK fmriprep image is fixed, will close this one.
from containers.
Related Issues (20)
- containers/scripts/singularity_cmd: Argument list too long HOT 2
- rewrite freeze_versions in Python HOT 4
- Add retries for docker hub connections
- Add option for "--bind" when running containers HOT 1
- Establish collection of health checks HOT 1
- Provide neurodesk convenience command
- Add ability to specify version of container when running HOT 4
- Add "etelemetry" to singularity_cmd
- bids-mriqc is not usable - likely due to our env setting HOT 4
- Fails while running on OSX HOT 3
- Add rudimentary testing of executability for freshly added containers
- Add walkthrough testing on Mac HOT 4
- flake: README example mriqc script, RuntimeError: Xvfb did not start HOT 2
- FOI: mriqc could leave Xvfb processes behind which would keep some paths not really deleted HOT 2
- bibsnet fails
- automated singularity recipe + builds seems to skip LTS version of fMRIPrep HOT 4
- Bind files/directories into containers? HOT 5
- Investigate CDI support
- apptainer, cache write error HOT 2
- Move from travis to github actions HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from containers.