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Reproducible Computational Geosciences

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Site management

The design is based on Hyde by Mark Otto. The instructions assume you manage your Ruby installation with rvm.

# install required software (if you're using a different system, consider deleting Gemfile.lock for a working configuration)
# rvm install ruby-2.7 --with-openssl-dir=$HOME/.rvm/usr (on Ubuntu 22.04, see https://stackoverflow.com/questions/72179373/cant-install-ruby-via-rvm-error-running-rvm-make-j4-on-ubuntu-22-04)
# bundle install

rvm use ruby-2.7

bundle exec jekyll serve # build the site

Ribbon

A generic "Fork me" ribbon has been added and can be configured (text, link) in the file _config.yml. The color is configured in public/css/agile.css. The ribbon appears on all pages via _layouts/default.html, and stylesheets are included in _includes/head_default.html if enabled.

Exclude pages from menu

If you do not want a page to appear in the left hand side menu, include the parameter exclude_from_nav: true in the page's frontmatter.

Privacy

External CDN links were replaced with local copies as follows:

  • https://cdnjs.cloudflare.com/ajax/libs/anchor-js/3.2.1/anchor.min.js saved to public/js/
  • https://cdnjs.cloudflare.com/ajax/libs/github-fork-ribbon-css/0.2.0/gh-fork-ribbon.min.css saved to public/css/ (same for IE9 variant .ie.min.css)

Google Fonts stored locally using https://google-webfonts-helper.herokuapp.com. Font Awesome manually downloaded from https://fontawesome.com/v4.7.0/.

Reproducible Research @ AGILE's Projects

agile-postprint-stamp icon agile-postprint-stamp

Shiny app to add a stamp to the first page of short paper PDFs for postprint publication in open repositories.

agile2022-03 icon agile2022-03

Reproducibility of "A machine learning based approach on predicting usage efficiency of shared e-scooters using vehicle availability data"

agile2022-24 icon agile2022-24

Reproducibility of Study of 3D computer Vision using deep learning on PointClouds representation.

agileca icon agileca

Cellular Automaton model for wildfire spread prediction on DGGS data model

covid-19 icon covid-19

Understanding COVID-19 Effects on Mobility: A Community-Engaged Approach

geoparsing-solved-or-biased icon geoparsing-solved-or-biased

This repository contains descriptions about how to reproduce our geoparsing evaluation study. More information can found in our paper "Geoparsing: Solved or Biased? An Evaluation of Geographic Biases in Geoparsing" accepted by AGILE 2022.

inaturalist_competition icon inaturalist_competition

Running inference on images to detect the species of animals and plants with a image-recognition model trained on the iNaturalist 2021 Competition

mapswipe_rapid_damage_assessment icon mapswipe_rapid_damage_assessment

This provides a demonstration for the paper "Exploring MapSwipe as a Crowdsourcing Tool for (Rapid) Damage Assessment: The Case of the 2021 Haiti Earthquake". To ensure reproducibility the findings of the paper are demonstrated here.

microsoftspeciesclassification icon microsoftspeciesclassification

Running inference on images to detect the species of animals and plants with the Microsoft AI for Earth Species Recognition Model

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