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3dmodel_test

chiron

A basecaller for Oxford Nanopore Technologies' sequencers

complex_tool

Extract monomer and contact info from complex PDB file

curl_command

CURL command to call RaptorX-Property and RaptorX-Contact locally

cwdtw

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals

cwdtw_align

Continuous Wavelet Dynamic Time Warping for DNA sequence alignment

cwdtw_genome

Continuous Wavelet Dynamic Time Warping for genome alignment

cwdtw_nano

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping in nanopore sequencing analysis

deepalign

DeepAlign: the protein structure analysis toolkit

deepbound

Predict the boundary of transcript start and end from RNA-seq reads alignment

deepcnf_auc

Training Conditional Random Fields (CRF) by Maximizing Area Under the ROC Curve (AUC)

deepopen_source

All relevant source code for protein related tools

deepsimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

from_ca_to_fullatom

Given CA trace in PDB format, restore full atoms

lig_tool

Extract ligands from original PDB file

make_nrdata

Make NR data for BLAST search

pdb_tool

Extract structural features from original PDB file

predict_property

Predict protein local properties using sequence or profile information.

raptorx-ss8

Protein 8-class secondary structure prediction

raptorx_property_fast

RaptorX-Property: a Standalone Package for Protein Structure Property Prediction

tgt_package

Generate A3M and TGT file from a given sequence in FASTA format.