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Rui's Projects

clashmini_deck icon clashmini_deck

Create a worksheet with mini infomations and run the choose deck scirpt. The output is all decks over classes sum ≥ 10. Just have fun.

cutprimers icon cutprimers

curPrimers is a tool for trimming primer sequences from amplicon based NGS reads

dmpage icon dmpage

Angular project of [CPIC Guidlines](https://cpicpgx.org/guidelines/)

fastqcount icon fastqcount

Summary fastq reads, bases, Q20, Q30, N bases, GC

freec-plot icon freec-plot

Plotting outputs of Control-FREEC for targeting sequencing data in specific chromosome or gene

goagent_out_of_box_yang icon goagent_out_of_box_yang

this is the newest goagent with yangyang's settings for floks who are not good at computer, yes, out of box.

pgcard icon pgcard

rewirte pharmacogenomics CPIC guidline in Angular 8

snpgroup icon snpgroup

将已知dbSNP编号的SNP位点转为MassArray输入需要的SNP Group格式。

strelka icon strelka

Strelka2 germline and somatic small variant caller

target_region_variant_calling icon target_region_variant_calling

variant calling in amplicon based sequencing. Use fastp to check QC, cutPrimers to cut primers, minimap2 to align reads, strelka2 to call variants, rmarkdown to report.

tmb icon tmb

肿瘤突变负荷学习笔记(tumor mutation burden)

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