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bacterialchains

A simulation framework made to describe how phages adsorb to chains of bacteria.

correlatedrestrictionmodificationsystems

A framework to simulate a ecosystem of bacterial strains with unique RM systems in the prescence of phages

covid19rr

Estimation of reproduction rates for the COVID-19 pandemic in Denmark based on publicly available data

diseasystore

R package that provides a feature store tailored towards disease modelling

diseasystorengc

diseasyutils

growingmicrocolonydynamics

growingmicrocolonydynamicsdata

growingmicrocolonyprotection

A simulation framework made to describe how a growing bacterial microcolony interacts with a phage population.

incidencemodel

networksir

Comparison of a network-based epidemic model and a SIR-based epidemic model

overlappingrestrictionmodificationsystems

pplotting

Plotting library for MATLAB 2014b or above (Obsolete)

qm

A small python quantum mechanics library which simplifies the notation of numpy and tailors it for quantum mechanics teaching

rasmusskytte.github.io

Portfolio overview

repo-file-sync-action

🔄 GitHub Action to keep files like Action workflows or entire directories in sync between multiple repositories.

scdb

R package for maintaining data bases with slowly-changing-dimensions

scdoc

Easily maintain and update time-versioned documentation

spatialbacteriaphagemodel

A framework to simulate several growing bacterial microcolonies during a phage attack.

synthetic-contact-matrices

Updates to the synthetic contact matrices