Comments (3)
Hi Wei,
Could you provide a copy of your hatchet.ini file here? At first glance it looks like the first step to download the reference panel may not have been done, or the path of the panel (located in the download_panel.refpaneldir variable) was not specified.
Sincerely,
Brian
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@DecodeGenome - the hatchet check
command (when it comes to checking mosdepth
) is essentially just trying to run mosdepth --version
and making sure that the return code is 0
. Can you confirm if this is indeed the case? I just installed mosdepth
from the bioconda
channel (version 0.3.3
) and it does work (as does hatchet check
for mosdepth
).
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