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8_idi_workcell

A repository for 8_ID_I work cell and module

ampqa

benchmarks

ECP-CANDLE Benchmarks

cryoem-gb-workflow-analysis

Analysis of workflow runs for the CryoEM-MD-AI Gordon Bell Submission

cs2_cvae

CS2 porting of CVAE code

deepdrivemd

DeepDriveMD implemented with Colmena

distllm

Distributed Inference for Large Language Models.

funcx-openfold

FuncX OpenFold interface

genslm

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

gladier_genslms

gpt_synth_seq

Generation of synthetic DNA sequences using GPT transformer model

mdlearn

Machine learning for molecular dynamics

megatron-deepspeed

Ongoing research training transformer language models at scale, including: BERT & GPT-2

metric_learning

metric learning on document embeddings

molecular_dynamics_neural_operator

Collection of machine learning models for learning molecular dynamics operators.

multi-rl-workflow

Workflows that concurrently train, use, and gather training data for multiple RL models

nougat

Implementation of Nougat Neural Optical Understanding for Academic Documents

pdfwf

PDF to Text extraction workflow.

picoprobe-portal

Collate data from Globus Search for easy discovery and transfer

picoprobedataflow

Data pipeline infrastructure for ANL PicoProbe

polaris_utils

protein-structure-template

protein_structure_hackathon

Hackathon repo for 11/28-11/30

rag4sci

Retrieval Augmented Generation for Science

sars-cov-2-modeling

Collection of ML models for SARS-CoV-2 molecular dynamics simulation modeling

scifm24-tutorial

Tutorial notebooks for SciFM24

spikeproteinanalysis-gb-2021

Analysis of Spike protein simulations using machine learning for the 2021 Gordon Bell submission.

summerstudenttemplate

TODO: Update with a brief project description

syntheticsequenceevaluation

A pipeline to evaluate synthetic sequences.

tpc-barcelona-llm-tutorial

Large Language Models (LLMs) for Science and Engineering Applications -- Tutorial given at TPC conference in Barcelona 2024