Comments (1)
Followup
Updating GenomicFeatures
now causes an error when loading EnsDb.Hsapiens.v75
in get_transcripts()
step.
Loading required package: ensembldb
Loading required package: GenomicFeatures
Error in value[[3L]](cond) :
Package 'GenomicFeatures' version 1.42.1 cannot be unloaded:
Error in unloadNamespace(package) : namespace 'GenomicFeatures' is imported by 'VariantAnnotation', 'Gviz', 'ensembldb', 'ggbio', 'biovizBase', 'OrganismDbi' so cannot be unloaded
10.
stop(gettextf("Package %s version %s cannot be unloaded:\n %s",
sQuote(package), oldversion, paste0(P, conditionMessage(e),
"\n")), domain = NA)
9.
value[[3L]](cond)
8.
tryCatchOne(expr, names, parentenv, handlers[[1L]])
7.
tryCatchList(expr, classes, parentenv, handlers)
6.
tryCatch(unloadNamespace(package), error = function(e) {
P <- if (!is.null(cc <- conditionCall(e)))
paste("Error in", deparse(cc)[1L], ": ")
else "Error : " ...
5.
library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc,
quietly = quietly)
4.
.getRequiredPackages2(pkgInfo, quietly = quietly)
3.
library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc,
quietly = quietly)
2.
.getRequiredPackages2(pkgInfo, quietly = quietly)
1.
library(EnsDb.Hsapiens.v75)
Solution
After you upgrade GenomicFeatures
, you must then also update EnsDb.Hsapiens.v75
(and, importantly, its dependencies). Then make sure to restart your R session to implement the changes.
from echolocator.
Related Issues (20)
- Problem with "N" using echodata::construct_colmaps HOT 2
- Problem with "N" using munged data HOT 8
- ABF fails when running for a qt trait -- proportion_cases is missing
- MAF cannot be inferred HOT 3
- finemap_loci fails using echodata::construct_colmaps if some parameters are set to NULL HOT 1
- Column names in topSNPs do not agree with co HOT 2
- Installation Errors HOT 3
- Conda Install Link Not Found HOT 1
- Conditional SNP error HOT 7
- Problems with echolocatoR::finemap_loci HOT 9
- Update documentation website
- GHA Docker: ` API rate limit exceeded` HOT 6
- vignettes causing errors in GHA (but not locally) HOT 4
- Incorporating POLYFUN HOT 2
- ModuleNotFoundError: No module named 'scipy'
- Singularity image fail to start HOT 5
- Can echolocatoR support co-localization analysis between GWAS-GWAS? HOT 1
- A valid target path could not be found HOT 5
- Error at step 1: compression in fwrite uses zlib library
- Functionnal fine-mapping
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from echolocator.