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bioanalyzer-profile

Analyze raw data from bioanalyzer

byo

python library for efficient low-level stuff to access all kinds of data and cool high level things like transcripts, splicing, etc.

clip_analysis

Scripts to analyze (PAR-)CLIP data.

distmap

DistMap

dropbead

eskrate

find_circ

Find circRNAs in RNA-seq data.

find_circ2

Find circRNAs in RNA-seq data.

flamanalysis

Data Analysis For FLAM-Seq Third Generation RNA Sequencing

helpers

'useful' little helper scripts for the day-to-day life in the N. Rajewsky dry lab

hsv1_cerebral_organoids

Code related to the manuscript 'Modelling viral encephalitis caused by herpes simplex virus 1 infection in cerebral organoids'

huntington_midbrain_organoids

Code related to single cell transcriptomic analyses in the manuscript 'Mutant Huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure'

mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

novosparc

novosparc_workshop

octopus_micrornas

openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

optocoder

optocoder_scripts

planarian_lineages

polya

pymaf

Easy handling of MAF files and many genomes

rajewsky-lab.github.io

Lab website

slam-drop-seq

spacegerm

SPACEGERM shiny app (archived, see GitLab for active fork)

spacemake

spacemake-test-data

Collection of optional sequencing read data for spacemake testing.

stimwrap