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boemd-net

Official code repository for Inter-Rater Uncertainty Quantification in Medical Image Segmentation via Rater-Specific Bayesian Neural Networks.

ground-truth-binary-masking-

convert json to binary mask

install-and-test-gpu

Step by step guide to create your venv with Tensorflow or Pytorch using CUDA

labelme

Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).

labelmeannotationtool

Source code for the LabelMe annotation tool.

medical-image-segmentation-with-attention-based-residual-double-u-net

miai_defect_detection_unet

Demo of using Unet in product defect detection

python_for_microscopists

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

segmentation_models.pytorch

Segmentation models with pretrained backbones. PyTorch.

segmentron

Support PointRend, Fast_SCNN, HRNet, Deeplabv3_plus(xception, resnet, mobilenet), ContextNet, FPENet, DABNet, EdaNet, ENet, Espnetv2, RefineNet, UNet, DANet, HRNet, DFANet, HardNet, LedNet, OCNet, EncNet, DuNet, CGNet, CCNet, BiSeNet, PSPNet, ICNet, FCN, deeplab)

segnetcmr

A Tensorflow implementation of SegNet for cardiac MRI segmentation

segnext

Official Pytorch implementations for "SegNeXt: Rethinking Convolutional Attention Design for Semantic Segmentation" (NeurIPS 2022)

unext-pytorch

Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022

yolov5-seg-labels-conversion

Converting Instance segmentation labels in COCO format to YOLOv5-seg