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16s-region

Align sequences to detect the variable regions they span

2020.salmonella_biofilm

Data sets and analyses related to https://doi.org/10.1101/605212

70s-resolution

Scripts for replication of the ribosomal RNA paper (http://dx.doi.org/10.1093/nargab/lqz016)

adapt-rna-seq-analysis

Processing of RNA-seq data and Differential Expression Analysis for The Norfolk ADaPt trial

albatradis

Comparative TraDIS analysis

bambi-its

ITS analysis on stool samples from preterm babies

biocondor

🦅 Retrieve, cache and search for bioconda packages and their descriptions

biofu

Scripts

biomcmc-lib

C library with lowlevel functions used by other software

bryn-qibcloud

The QIBCloud management web interface

coronahit_guppy

Configuration for demultiplexing coronaHiT data with Guppy

dadaist2

Dadaist2 🟨 Highway to R

datasciencegroup

Scripts and docs from the datascienceatqib group

datasets

Benchmark datasets for WGS analysis

denovo

A simple DSL2 workflow: tutorial

dorado-gpu-testing

Benchmarking several NVIDIA GPUs with dorado

escape_rnaseq_analysis

Protocol for the analysis of RNA-seq data for the ESCAPE study

faprotax-tools

Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)

fieldbioinformatics

The ARTIC field bioinformatics pipeline

galaxy-front-page

galaxy-front-page

galaxy-tools

A collection of bioinformatics tools for use with galaxy written at Quadram Institute

galru

Long read spoligotyping for Mycobacterium tuberculosis

gmh-meta-its-profiling

Whole Metagenome Shotgun and ITS amplicon sequencing methods

gmh-metafun

Functional analysis of metagenome datasets

gmh-sops

SOPs for Gut Microbes and Health

hpc-utils

Utilities to be used with NBI HPC

interleafq

📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.

irida-plugin-qi-phylo

irida-plugin-qi-taxon

irida-plugin-qi-typing