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3d-unet--tensorflow

3D Unet for Isointense Infant Brain Image Segmentation

7t_preprocessing

Scripts for preprocessing of 7T test retest dataset doi:10.1038/sdata.2014.54

academic-drawing

Providing codes (including Matlab and Python) for visualizing numerical experiment results.

aibs_cell_types

example using AIBS cell types data

all-conv-pytorch

Pytorch implementation of "Striving for Simplicity: The All Convolutional Net" (https://arxiv.org/abs/1412.6806)

clustering_allen_neuron

for 2nd paper using allen db, clustering neurons with MLs, collaborating incheol.

dti-scripts

A selection of scripts for DTI analysis with FSL

dyconpro

MATLAB toolbox (not just) for dynamic functional connectivity processing. An ongoing WIP.

fmriconnectome

A collection of codes to construct and analyze fMRI connectivity networks.

freesurfer

scripts for running freesurfer locally and extracting individual results

gradient_analysis

hcp_corr

load hcp (human connectome project) data, get correlation matrices with less memory usage and faster

keras_demo

leida

Leading Eigenvector Dynamics Analysis

linux-command

Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。https://git.io/linux

machinelearning

Machine learning resources

modified_tracula_pipeline

A modified version of the Freesurfer 6.0.0 Tracula pipeline using MRIcron dcm2niix for file conversion

nibabel

Python package to access a cacophony of neuro-imaging file formats

nih_marmoset_atlas_v1

Cortical Parcellation

null_models_net_neurosci

Null models in network neuroscience

pandora-matlab

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases. See the Wiki for branch information.

pycwt

A Python module for continuous wavelet spectral analysis. It includes a collection of routines for wavelet transform and statistical analysis via FFT algorithm. In addition, the module also includes cross-wavelet transforms, wavelet coherence tests and sample scripts.

pynwb

A Python API for working with Neurodata stored in the NWB Format

python-samplerate

Python bindings for libsamplerate based on CFFI and NumPy

pytorch-cnn-visualizations

Pytorch implementation of convolutional neural network visualization techniques

rich_club

Statistical test for rich-clubness and null-models

richclub

Python package for rich club analysis and detection of graphs, using igraph

time-series-analysis-tutorial

时间序列分析教程

vaa3d_tools

www.vaa3d.org

wm-training-modularity

Repository containing a code for network analyses of longitudinal working memory training data with multi-session fMRI scanning.