Comments (1)
Hey there @jcmcnch! Sorry to do this to you again, but what you mind posting this on the QIIME 2 forum? That is where we provide user support. https://forum.qiime2.org. Thanks!
Ps - we will need some more info there - what version of Q2, what were the standalone cutadapt commands run? Maybe summarizing what you did in a bulleted list will help. As well, any data you can provide to help reproduce would be great. Thanks!
from q2-cutadapt.
Related Issues (16)
- trim-*: discard unmatched HOT 10
- reorient/demux mixed-orientation reads HOT 8
- Add Log Ouput HOT 1
- `trim-single`: accept `SampleData[JoinedSequencesWithQuality]` HOT 4
- Expose --m (min output read length) parameter HOT 4
- Too many open files HOT 13
- Convert --verbose stats to visualization HOT 3
- Add citations
- Include quality trimming in the q2-cutadapt plugin? HOT 3
- When called from a shell script, qiime2 is calling the system version of cutadapt, not the qiime version. HOT 5
- Plugin error from cutadapt: HOT 1
- Update for cutadapt 3.0
- add support for multicore? HOT 7
- Demux dual-index PE seqs HOT 1
- Linked primer description text
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from q2-cutadapt.