Comments (5)
@thermokarst has been having some good success with vega, maybe that would be an option here as well?
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👍
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either that, or including feature metadata.
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That's exciting! Definitely would like to see those demos at some point.
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Closing all ancom related issues as we will no longer be maintaining/improving ancom, and instead will focus on ancombc improvements moving forward (and ancombc2 once that paper has been published).
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Related Issues (20)
- IMP: add character escaping in formula/group parameters for ancombc HOT 5
- BUG: chosen intercept column in metadata but not table will default to alphabetical order
- BUG: ANCOM-BC help text updates
- FEAT: new visualization for ancombc results
- IMP: tabulate viz additions HOT 1
- IMP: intercept column toggle on tabulate viz
- IMP: da-plots should take `FeatureData[Taxonomy]` as optional input HOT 2
- da-barplot does not handle spaces in metadata values
- BUG: tabulate viz does not handle single reference level values or default dummy coding
- BUG: error for reference_level column::value should be dynamic based on too many vs too few separators
- da-barplot makes assumptions about feature id schema
- IMP: Update --p-reference-levels input type within ANCOM-BC as a Collection
- BUG: remove neg-lb param
- Hyphens in metadata column names passed to ancombc's --p-formula being interpreted as formulaically meaningful HOT 1
- BUG: ANCOM-BC Fails if sample IDs look too much like exponent HOT 9
- NEW: add ancombc2 to composition HOT 2
- BUG: ancombc no longer works with '*' as the interaction term in the formula HOT 4
- da-barplot viz should allow for copy/pasting feature-ids HOT 1
- DEP: ANCOMBC unable to load phyloseq
- Filter out samples with missing values
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