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apm_matlab

APMonitor Optimization Suite in MATLAB

arduino

Process Control Temperature Lab

atlas

Altered TCR Ligand Affinities and Structures

baldr

bms038_analysis

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

cancerseekv1

R code for the algorithm used in Cohen et al. Science 2018 "Detection and localization of surgically resectable cancers with a multi-analyte blood test", Science 2018, 359(6378):926-930.

casadi

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

chinesener

A neural network model for Chinese named entity recognition

cliner

Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in clinical text of electronic health records.

continuous_analysis

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

densecap

Dense image captioning in Torch

dockerfile4k8s

解决gcr.io镜像库无法访问

dokerimage

dokerimage

dtnn

Deep Tensor Neural Network

embl-single-cell-course-2016

Material for lecture at the EMBL Single Cell Course 2016

fasttext

Library for fast text representation and classification.

follow-me-install-kubernetes-cluster

和我一步步部署 kubernetes 集群

gliph

Grouping of Lymphocyte Interactions by Paratope Hotspots

graphnn

Training computational graph on top of structured data (string, graph, etc)

igseqanalysis

imgthla

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

inception

一个集审核、执行、备份及生成回滚语句于一身的MySQL自动化运维工具

jx

jx is a command line tool for working with Jenkins X: automated CI/CD for Kubernetes

kallisto

Near-optimal RNA-Seq quantification

know-evolve

Implementation code for ICML '17 paper "Deep Temporal Reasoning for Dynamic Knowledge Graphs"

kubernetes

Production-Grade Container Scheduling and Management

learn-bazel

lm-lstm-crf

Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning