qbic-pipelines Goto Github PK
Name: QBiC (qbic-pipelines)
Type: Organization
Bio: Bioinformatics analysis pipelines at QBiC
Location: University of Tübingen
Blog: https://qbic.life
Name: QBiC (qbic-pipelines)
Type: Organization
Bio: Bioinformatics analysis pipelines at QBiC
Location: University of Tübingen
Blog: https://qbic.life
Nextflow pipeline wrapper for executing Cell Ranger
Create panel of normals for Mutect2 & CNVKit
A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch
Intersects Strelka2 and Mutect2 VCF files
mlf-core prediction package for U-Net models trained on the LiTS dataset.
From metagenomes to epitopes and beyond
Please use the original pipeline nf-core/mag. This is just a fork to keep project results reproducible. You can add branches to this repository and tag them, which will automatically trigger a new build on dockerhub. You can run a specific tag with `nextflow run qbic-pipelines/nf-core-mag -r <tag> -profile cfc_dev --reads "*_R{1,2}.fastq.gz" [options]`.
This is a cloned repository, please use the original pipeline here: https://github.com/nf-core/rnaseq
Docs for QBiC pipelines
Differential gene expression analysis and pathway analysis of RNAseq data
Pipeline for pH analysis of A. thaliana root tissue
Project to automate the segment the root tissue of A. thaliana into 5 different classes, includes automated HPO.
Prediction package for root tissue segmentation in fluorescence microscopy images of A. thaliana
Statistics package for pH analysis based on root tissue segmentation
Integration of scRNA-seq datasets and cell type label transfer with scVI and scANVI
A pipeline to download raw data from SRA
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.