pwrose Goto Github PK
Name: Peter Rose
Type: User
Company: San Diego Supercomputer Center, UCSD
Twitter: peterwrose
Location: La Jolla, CA
Peter Rose's Projects
auto-ml
Example for using auto-sklearn
awesome-spark
A curated list of awesome Apache Spark packages and resources.
binder-neo4j
Example of a Binderised repo running neo4j
biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java framework for processing biological data.
biojava-notebooks
BioJava examples in Jupyter Notebooks
ciml-summer-institute-2021
Repository for the CIML 2021 Summer Institute training materials.
ciml-summer-institute-2022
Repository for the CIML 2022 Summer Institute training materials.
ciml-summer-institute-2023
ciml-summer-institute-2023
coordinates-compression
This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".
coronavirus-knowledge-graph
Prototype Neo4j Knowledge Graph for Coronavirus outbreaks
covid-19-community
Community effort to build a Neo4j Knowledge Graph (KG) that links heterogenous data about COVID-19
covid-19-notebooks
Jupyter Notebooks to access COVID-19 datasets
covid19-graph
Load COVID19 incident tracking data into Neo4j - source is JHU data
df-parallel
Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.
dissecting_hype
Code to accompany my blog post "Dissecting the Hype With Cheminformatics"
enlace2021_pr
Project 19: Spatial, temporal, and phylogenetic analysis of COVID-19 spread
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
igv-example
Example using IGV
ipycytoscape
A Cytoscape Jupyter widget
jupyter-guide
Best practices guide for using Jupyter Notebook and Jupyter Lab
jupyter-renderers
Renderers and renderer extensions for JupyterLab
jupyterlab
Demonstrating how to get JupyterLab working with Binder
kg-bio
Downloads and prepares Biological Repositories for ingestion into Knowledge Graphs
lineages
Parse SARS-CoV-2 lineages from publications
mmtf
The specification of the MMTF format for biological structures
mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
mmtf-java
The java implementation of the MMTF API, decoder and encoder.
mmtf-java-benchmark
mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
mmtf-pyspark-benchmarks
Benchmarks for mmtf-pyspark project
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