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1976

Visualisation of students killed by the police in 1976

1976_map_vue

Victims of the Apartheid state: 1976 map (current focus: Western Cape)

2014-11-27-uct

Software Carpentry University of Cape Town, South Africa

2016-10-05-riverclub-python

2019-09-10-uwc-bellville

adjust_vcf

amplicon_coverage_plot

interactive barplot for amplicon sequencing

amplicon_schemes

ampseer

Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate between ARTIC v3, ARTIC v4, ARTIC v4.1, VarSkip 1a, VarSkip 2, Midnight and VarSkip Long primer sets sequenced by Illumina or ONT.

angular-flask

An AngularJS (frontend) + Flask / Python (backend) Boilerplate Application

ansible-certbot

ansible-cloudlaunch

Ansible playbook for deploying CloudLaunch

ansible-docker-boot

Run any Docker container on any VM

ansible-examples

Examples of how Ansible playbooks work

ansible-examples-1

Starter examples of ansible playbooks & environments. These examples are more end-to-end, but predate http://galaxy.ansible.com. Check out http://galaxy.ansible.com/ for lots of great community generated content.

ansible-galaxy

An Ansible role for managing a Galaxy server

ansible-galaxy-envmodules-sanbi-

Ansible role to integrate Galaxy with SANBI's Environment Modules setup

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

ansible-galaxy-os

An Ansible role is for configuring the base operating system useful for running Galaxy.

ansible-galaxy-pam-auth-sanbi

Install PAM auth configuration for Galaxy (SANBI setup)

ansible-galaxy-sge-sanbi

Ansible role to integrate Galaxy with SANBI SGE cluster

ansible-postgresql-objects

A simple Ansible role for managing PostgreSQL objects (users, groups, databases, and privileges).

ansible-role-globus-server-setup

This role allow the user to rapidly deploy a Globus Connect Server. Globus is a popular implimentation of GridFTP that already has many clusters around the world.

ansible_galaxy_cleanup

ansible_playbooks

Ansible playbooks used at SANBI

aoc2019

Code for Advent of Code 2019

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

app-galaxy

arranger

Data Portal API and component Generation - https://www.overture.bio/products/arranger

arvados

An open source platform for managing and analyzing biomedical big data