Support open standards for exporting spectra about spectral-workbench HOT 10 OPEN

uhm, not sure if our analysis are compatible with mass spec, but this is an interesting reference of open data formats for use with mass spectrometers.
https://en.wikipedia.org/wiki/Mass_spectrometry_data_format#Open_formats

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Hi, Bryan, just to be clear, how is this issue distinguished from the export formats available in the left side of each page: http://spectralworkbench.org/analyze/spectrum/43491

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It was a request by someone to the web@ list. I'll have to look at that
later. It isn't showing up on the mobile version, which makes sense.
On Feb 10, 2015 5:46 PM, "Jeffrey Warren" [email protected] wrote:

Hi, Bryan, just to be clear, how is this issue distinguished from the
export formats available in the left side of each page:
http://spectralworkbench.org/analyze/spectrum/43491

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#24 (comment)
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Ah I see the export functions now. I'm not sure what the person wanted who emailed web@, but I think it might be worth keeping this ticket open to investigate open standard formats for data of this kind.

The current export formats are custom and arbitrary based on how we store the data, right?

If the open standards aren't important, we can close this ticket.

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I think the only standards are for csvs, and we do have an open ticket for
that.
On Feb 10, 2015 11:13 PM, "Bryan Bonvallet" [email protected]
wrote:

Ah I see the export functions now. I'm not sure what the person wanted who
emailed web@, but I think it might be worth keeping this ticket open to
investigate open standard formats for data of this kind.

The current export formats are custom and arbitrary based on how we store
the data, right?

If the open standards aren't important, we can close this ticket.

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#24 (comment)
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Did you see the wikipedia link, posted in an earlier comment on this ticket, with a list of open standards of mass spec data?

JCAMP-DX is an ASCII based standard, ANSI-MS is based on netCDF (whatever that is), etc.

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oh cool, i do remember that; was looking in email view only.

On Wed, Feb 11, 2015 at 11:40 AM, Bryan Bonvallet [email protected]
wrote:

Did you see the wikipedia link, posted in an earlier comment on this
ticket, with a list of open standards of mass spec data?

JCAMP-DX is an ASCII based standard, ANSI-MS is based on netCDF (whatever
that is), etc.

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#24 (comment)
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I can rename the ticket to be more appropriate for exporting standard mass spec formats. Under the current title of exporting spectra, this ticket is already resolved.

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Cool, and let's disambiguate from the CSV requests in the other issue.
Thanks!

On Wed, Feb 11, 2015 at 12:27 PM, Bryan Bonvallet [email protected]
wrote:

I can rename the ticket to be more appropriate for exporting standard mass
spec formats. Under the current title of exporting spectra, this ticket is
already resolved.

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#24 (comment)
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there is also the NUTS file format.
and i support this issue.

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