Pat Schloss's Projects
Review of Will Close's code for subsampling shared files to a desired number of reads.
R bindings to libarchive, supporting a large variety of archive formats
Conda recipes for the bioconda channel.
Rapid and scalable correlation estimation for compositional data
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
My attempt to reproduce the Kozich et al. study
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
farm website
Template for computational laboratory notebooks
PAired-eND Assembler for DNA sequences
Repository to demonstrate how to fold a paper airplane
An exercise to test the reposucibility of folding paper airplanes
My planets
Pat Schloss's website
Introduction to R for non-programmers using gapminder data.
Software Carpentry introduction to R for novices using inflammation data.
Convenient Functions for Splitting Strings
A repository to test out my efforts to make my research more reproducible
Final project for Codecademy's Ruby module