Comments (5)
Yes, I forgot to do that, I have edited it now.
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Hi @tsenapathi, this is very good! Since ProtoCaller
doesn't depend on pypdb
anymore, this is no longer a requirement, but changing htmd-pdb2pqr
to pdb2pqr
requires some work. The tests for the tentative 1.2.0
version seem to pass now on my own laptop, but strangely enough I can't get the build to work, so there is no conda
package yet. I am not exactly sure what is going wrong, I will try to take a look in the next few days, but it might be worth trying to relax the pdb2pqr
requirements, as they seem to be clashing with the other dependencies.
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@msuruzhon Great!! Let me know if there is anything I can do to assist.
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The conda
package is up and running and I have committed to master
. I have also created two releases: 1.1.2
, which covers the changes since the overhaul of the Protein Data Bank, and 1.2.0
, where the only change relative to 1.1.2
is the pdb2pqr
dependency. Both of them should be installable from conda
and both of them should be functional. Feel free to test them and reopen if there are any issues.
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@msuruzhon Should we update the README.rst as well?
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Related Issues (20)
- Abnormal memory usage in protocaller HOT 13
- Can I use ProtoCaller in protein-protein system? HOT 4
- The merge has opened/closed a ring HOT 12
- An input file contains a line longer than 4095 characters HOT 4
- LINCS warning and structure clash HOT 7
- Can I supply a ligand coordinate file as input? HOT 1
- H bond constraint HOT 1
- How to supply a custom pdb file (without pdb id) for protein? HOT 2
- Memory usage constantly growing with the number of perturbations. HOT 6
- How to restore ligand from parametrised file? HOT 2
- Select chain from polymer HOT 5
- Molecule ID not found HOT 1
- Explicit valence for atom # 37 C greater than permitted HOT 5
- Error while calling command 'antechamber' HOT 1
- minimise not take effect when protonated was set to True HOT 2
- Invalid file format for file HOT 2
- tleap failed for protein HOT 2
- Not all chains are contained in the FASTA sequence
- Installing error
- running error
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