Comments (3)
kexul
commented on June 12, 2024
1
I switch to the default installation method use conda install -c conda-forge -c omnia -c michellab -c essexlab protocaller since you said you've updated the conda package. Now everything works. Thanks for your quick reply and fix.
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msuruzhon
commented on June 12, 2024
This is very likely a conda problem, so I would advice you to install ProtoCaller in its own empty environment created with python=3.7. I have also noticed that the resolution times can be incredibly slow, so you might benefit from installing it using mamba instead.
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kexul
commented on June 12, 2024
I did install protocaller in a clean new environment with python3.7. I reinstalled it again and again, no help.
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Related Issues (20)
- Abnormal memory usage in protocaller HOT 13
- Can I use ProtoCaller in protein-protein system? HOT 4
- The merge has opened/closed a ring HOT 12
- An input file contains a line longer than 4095 characters HOT 4
- LINCS warning and structure clash HOT 7
- Can I supply a ligand coordinate file as input? HOT 1
- H bond constraint HOT 1
- How to supply a custom pdb file (without pdb id) for protein? HOT 2
- Memory usage constantly growing with the number of perturbations. HOT 6
- How to restore ligand from parametrised file? HOT 2
- Select chain from polymer HOT 5
- Molecule ID not found HOT 1
- Explicit valence for atom # 37 C greater than permitted HOT 5
- Error while calling command 'antechamber' HOT 1
- minimise not take effect when protonated was set to True HOT 2
- Invalid file format for file HOT 2
- tleap failed for protein HOT 2
- Not all chains are contained in the FASTA sequence
- Installing error
- running error
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