Name: DEBBIE- database of biomedical materials
Type: User
Company: EU Horizon 2020
Bio: DEBBIE is an EU funded, MSCA-IF project to automatically curate biocompatibility data from the biomedical literature into an open-access database
Location: Barcelona
Blog: https://projectdebbie.github.io/
DEBBIE- database of biomedical materials's Projects
PMIDs of non-relevant articles to use for filtration
Gold standard of biomaterials and biocompatibility literature annotated by the Biomaterials Annotator
A lexical instrument to annotate biomaterials text
SVM classifier pre-trained on biomaterials abstracts
Component of the Biomaterials Annotator that maps terms from dictionaries
A pipeline for the extraction of information about biomaterials from PubMed abstracts into a MongoDB collection
PMIDs of the gold standard set for 'biocompatibility'
Extracts mesh tags from medline files
The Device, Experimental scaffolds and medical Device ontology (DEB)
A tool for converting owl ontologies to a dictionary object with user-selected classes
Applying text analysis and annotation pipeline to the polydioxanone literature
Project DEBBIE pages
python code to rertieve abstracts from pubmed
A component to convert the format from pubmed into the input format of the classifier