Comments (6)
I managed to get the executable in the cmake branch work by installing Intel tool chain (Intel OneAPI HPC toolkit), uninstalling OpenMPI and HDF5 (both of which were installed from yum repos), and compiling HDF5 with Intel compilers. The above-mentioned issue could be due to mixing code from incompatible libraries.
I will try to get the cmake+gcc generated executable work.
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@mbkumar I don't want to create a new issue. I think this is relevant.
I got the following error when compiling on stellar. Do you know if the dependence of CMAKE>3.20 can be revised? Somehow, stellar only has 3.18 and 3.19.
CMake Error at CMakeLists.txt:1 (cmake_minimum_required):
CMake 3.20.0 or higher is required. You are running version 3.18.2
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@mbkumar After changing the CMakeLists.txt, I got the following error. Any clue?
$ cmake -DCMAKE_Fortran_COMPILER=/opt/intel/oneapi/mpi/2021.1.1/bin/mpiifort .
-- The C compiler identification is unknown
-- The Fortran compiler identification is Intel 20.2.1.20201208
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/intel/oneapi/mpi/2021.1.1/bin/mpicc - skipped
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /opt/intel/oneapi/mpi/2021.1.1/bin/mpiifort - skipped
-- Checking whether /opt/intel/oneapi/mpi/2021.1.1/bin/mpiifort supports Fortran 90
-- Checking whether /opt/intel/oneapi/mpi/2021.1.1/bin/mpiifort supports Fortran 90 - yes
-- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES)
-- Found OpenMP_Fortran: -qopenmp (found version "5.0")
-- Could NOT find OpenMP (missing: OpenMP_C_FOUND) (found version "5.0")
-- Looking for pthread.h
-- Looking for pthread.h - not found
-- Could NOT find Threads (missing: Threads_FOUND)
-- Looking for pow in m
-- Looking for pow in m - not found
-- compiler is mpiifort
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
/usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
/usr/share/cmake/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
/usr/share/cmake/Modules/FindBLAS.cmake:310 (find_package)
CMakeLists.txt:63 (find_package)
-- Configuring incomplete, errors occurred!
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The issue is now fixed thanks to the help from Kitware.
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Related Issues (20)
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