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bayesflow

A library for constructing specialized neural networks for Bayesian parameter inference (invertible networks) and Bayesian model selection (evidential networks).

bn_coalescence_finite-size-scaling

Code used to generate 'Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence' by Zierenberg et al.

bn_dynamic-range

Characterize dynamic range of branching network (directed percolation) with and without coalescence

contact_pattern_outbreak

Code accompanying our paper "How contact patterns destabilize and modulate epidemic outbreaks"

covid-vaccine-dynamics

covid19-forecast-hub-europe

European Covid-19 Forecast Hub. Under development.

covid19_inference

Bayesian python toolbox for inference and forecast of the spread of the Coronavirus

covid19_inference_forecast

covid19_infoxpand_feedbackloop

Code and figures of the paper 'Interplay between information and disease spread shapes SARS-CoV-2 transition to endemicity'

covid19_metastability

covid19_npis_europe

covid19_research

Collection of jupyter notebooks related to COVID-19 research

covid19_soccer

covid19_tti

covid19_vaccination

covid19_winter_dilemma

covid_bayesian_mcmc

Bayesian Markov Chain Monte Carlo Forecast for COVID-19

criticalavalanches

dendritic_balance

Code to reproduce experiments in "Local dendritic balance enables learning of efficient representations in networks of spiking neurons"

dyadic_task

hdestimator

historydependence

Code to reproduce results in "Embedding optimization reveals long-lasting history dependence in neural spiking activity"

icomo

Tools for the inference of compartmental models

mismatch_responses

These files accompany the results obtained in "Visuomotor mismatch responses as a hallmark of explaining away in causal inference".

mouse_visual_timescales

Signatures of hierarchical temporal processing in the mouse visual system

mrestimator

Toolbox for the Multistep Regression Estimator

mrestimator_matlab

MATLAB wrapper for the MR. Estimator toolbox.

neuromorphic-bistability

Repository accompanying Cramer et al., Phys. Rev. Research (2023)

nninfo

A Python Package for the Analysis of Deep Neural Networks using Information Theory

prediction_mismatch

A model for prediction mismatch responses in cortex