Issue with Spectrum Reader about ms-data-core-api HOT 7 CLOSED

I'm sorry it took so long to reply. You can close the bug now!

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The sysout that outputs the Spectrum ID value can be located here, which I understand is out of scope for ms-data-core-api.

Also, can you build the source code from release 2.0.5? For me maven informs that it fails under two tests:

Failed tests:
  MzIdentMLIgnoreProteinInferenceTest.testGetIdentificationIDs:126 The id of the first identification should be PDH_psu|NC_LIV_020800_0 expected:<DBSeq_1_[psu|NC_LIV_10274]0> but was:<DBSeq_1_[Rnd1psu|NC_LIV_14506]0>
  MzTabControllerImplTest.testProteinIdentification:72 The first protein has

Tests run: 98, Failures: 2, Errors: 0, Skipped: 0

from ms-data-core-api.

I updated that in the current version. Can you check the current version. I also update the some of the dependencies including jmzTab. I don't think I can go back to version 2.0.5. But I will be more that happy to support you and help you the deploy this version 2.0.8.

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I can’t look into it right now but I’ll check the updated version as soon as I get some time. Thank you so much for your support, I’ll keep you updated if anything goes wrong!

Natan Streppel

On Aug 3, 2016, at 12:03 PM, Yasset Perez-Riverol [email protected] wrote:

I updated that in the current version. Can you check the current version. I also update the some of the dependencies including jmzTab. I don't think I can go back to version 2.0.5. But I will be more that happy to support you and help you the deploy this version 2.0.8.

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Please do it. I will leave open this issue until you have a look.!!!

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Also, feel free to contribute, just make a pull-request and I will integrate your changes.

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Are you using the library? We would like to have a list of software that is using the library.

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