powerspope Goto Github PK

ardca.jl

Autoregressive networks for protein

c-cmaes

CMA-ES written in ANSI C (yet fairly object-oriented)

canaryproject

Developing a Makov Chain Model to build a statistical model of canary song sequences

celldeathchecker

Python based program to count if cells are alive or dead using green and red fluorescents.

deduper-powerspope

Tool to remove PCR duplicates

deepfri

Deep functional residue identification

demultiplex

Tool to Demultiplex and determine the level of index swapping and undetermined index-pairs, before and after quality filtering of index reads.

docker_test

facebook-post-scraper

Facebook Post Scraper 🕵️🖱️

flowtest

Conditional Flow Matching Pytorch Test Implementation

machine-learning-coursera

Machine Learning Coursera course homework and case study examples

mlmodules

Here are modular ML portions that I have written for myself, but included jupyter notebook examples explaining them. Hopefully you find them useful!

molzip

The gzip classification method implemented for molecule classification.

motif-mark

Python Tool to visualize where binding Motifs are located on an intron/exon.

ng-video-lecture

Practice Making my own Transformer NLP based model for Protein Sequence Character Level Information

proteinmpnn

Code for the ProteinMPNN paper

qaa

RNA-Seq Quality Assessment Script

random_edge_predictor

Generate random edge predictors in a Graph Network based on the open triangle concept

rfdiffusion

Code for running RFdiffusion

skill-assessments

Training requirements for joining projects

snakemake_tutorial

Snakemake example, followed tutorial at https://snakemake.readthedocs.io/en/stable/getting_started/installation.html

stochasticmodelingofbiologicalsystems-class

Stocastic Modeling of Biological Systems Class Notes and Homework written in LaTeX and Matlab.

talagit

usefulrosettascripts

Here are some Rosetta based scripts that I have made that are general enough they may be useful for something within your project! Enjoy :)

vimsettings

Repo to hold my .vimrc file, so I can add it to any docker container/anywhere