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Niko Popitsch's Projects

argos icon argos

Analysis of Repetitive GenOme Sequences

cohort_varan icon cohort_varan

python pipelines for the comprehensive annotation of cohort-wide VCF files

nanopanel2 icon nanopanel2

Nanopanel2: a somatic variant caller for Nanopore panel sequencing data

pysrna icon pysrna

pysrna: analysis pipeline for small RNA-seq data

rnalib icon rnalib

rnalib: a python-based transcriptomics library

splice_sim icon splice_sim

Splice_sim: a nucleotide-conversion enabled RNA-seq simulation and evaluation framework

varan-gie icon varan-gie

VARAN-GIE extends Broad's popular genome browser IGV with functionality to edit, annotate and merge genomic interval sets

vcfanno icon vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

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