polyactis Goto Github PK
Name: Yu S. Huang
Type: User
Bio: Senior Director of Bioinformatics, Genecast Biotech. Modelling and alrogithms.
Location: Shanghai
Blog: https://www.yfish.org/
Name: Yu S. Huang
Type: User
Bio: Senior Director of Bioinformatics, Genecast Biotech. Modelling and alrogithms.
Location: Shanghai
Blog: https://www.yfish.org/
Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data.
Accurity is a computational method that infers tumor purity and tumor cell ploidy from tumor-normal WGS (whole exome will probably work too) data by jointly modelling SCNAs and heterozygous germline single-nucleotide-variants (HGSNVs).
the old annot svn repository
Automatically exported from code.google.com/p/autismgenetics
Miscelaneous Goodies to share
An enhanced version of GADA, a fast and sparse segmentation algorithm
Eigen tools by Nick Patterson and Alkes Price lab
utilities for indexing and sequence extraction from FASTA files
A tiny C library for managing SOM (Self-Organizing Maps) neural networks
This is Yu Huang's fork of GATK tag=1.6 Repository, https://github.com/broadgsa/gatk. Choose 1.6 because GATK source code started to be closed after that. Multiple custom java functions utilizing GATK libraries.
IO related classes/functions
Automatically exported from code.google.com/p/gwasmodules
Automatically exported from code.google.com/p/gwaswebinterface
Nam/Joe/Charles's scripts ...
Julia Probability Programming
2007 class math508, Filtering Theory, HMM, Kalman Filters
Pegasus Python3 APIs and the helper class Workflow.py
EIG 3.0 C code and some Dockerfile. Automatically exported from code.google.com/p/polyactis
My website based on Jekyll https://www.yfish.org/
A repo that contains miscellaneous Python/C++ modules/programs, a standalone Python module 'palos' by the yfish group (can be installed by pip).
Automatically exported from code.google.com/p/pysam
old namesake svn repository,
repository contains a GOInformativeNode program, from old namesake svn repository
Code for the Rust book https://doc.rust-lang.org/book/title-page.html
a bunch of shell/python utilities program, was in a private svn repository before
smith-waterman-gotoh alignment algorithm
Port of Statistical Rethinking (2nd edition) code to Julia
StatisticalRethinking notebook project using Turing and Pluto notebooks (derived from Max Lapan's Jupyter project)
C++ wrapper to tabix indexer
A playground to test different programming languages.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.