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tpoisot avatar tpoisot commented on June 14, 2024

Works as expected here - let's make this a VIRION issue

julia> v = taxon("adeno-associated virus 3b"; strict=false)
Adeno-associated virus - 3 (ncbi:46350)

julia> [rank(l) => l for l in lineage(v)]
12-element Vector{Pair{Symbol, NCBITaxon}}:
 Symbol("no rank") => root (ncbi:1)
     :superkingdom => Viruses (ncbi:10239)
            :clade => Monodnaviria (ncbi:2731342)
          :kingdom => Shotokuvirae (ncbi:2732092)
           :phylum => Cossaviricota (ncbi:2732415)
            :class => Quintoviricetes (ncbi:2732422)
            :order => Piccovirales (ncbi:2732534)
           :family => Parvoviridae (ncbi:10780)
        :subfamily => Parvovirinae (ncbi:40119)
            :genus => Dependoparvovirus (ncbi:10803)
          :species => Adeno-associated dependoparvovirus A (ncbi:1511891)
 Symbol("no rank") => Adeno-associated virus - 3 (ncbi:46350)

Names only mismatch because a non-strict matching is used.

from ncbitaxonomy.jl.

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