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advanced-git

some data and templates for an slightly more advanced git course

atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

chetah

scRNA-seq cell type identification

chimeraviz

chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

demultiplex

Code for demultiplexing fastq files, and a library for flexibly allowing mismatches during barcode recognition. **This code has moved to https://bitbucket.org/princessmaximacenter/demultiplex .**

elixir-cloud-genomics

ensembldb

This is the ensembldb development repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ensembldb.html Contributions: https://github.com/jotsetung/ensembldb. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ensembldb or https://github.com/jotsetung/ensembldb/issues.

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

fusionannotator

FusionAnnotator source code

fusionfilter

source code for FusionFilter

fusioninspector

FusionInspector code

hubrechtbioinformatics.github.io

Bioinformaticians at the Hubrecht Institute

ibls-expression

Exercises for the UBC Master's course Introduction to Bioinformatics for the Life Sciences

infercnv

Inferring CNV from Single-Cell RNA-Seq

jupyter-bigdata-notebooks

Notebooks for the big data group

phtools

various tools. Mostly shell, perl and R

plijnzaad.github.io

quilt

program to detect hydrophobic patches on protein surfaces

reproducibleresearch

Workshop on Reproducible Science using Jupyter notebooks

rsg_workshop

Planning and web page for RSG workshsop

scseq

Scripts and tools for single cell RNAseq. This code has moved to https://bitbucket.org/princessmaximacenter/scseq/

shell-extras

Extra material for Software Carpentry shell lesson.

single-cell-sequencing

scripts and functions to analyse single-cell sequencing data. This code has moved to https://bitbucket.org/princessmaximacenter/platediagnostics

star-fusion

STAR-Fusion codebase

warp

WDL Analysis Research Pipelines

wdl-mode

WDL (Workflow Description Language) major mode