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Pietro de Mello's Projects

2021-06-26-dominicode-online icon 2021-06-26-dominicode-online

Saludos! Este es el repositorio para nuestro primer curso de Data Carpentry para estudiantes de la República Dominicana.

anole_color_comparative_transcriptomics icon anole_color_comparative_transcriptomics

A bunch of shell, R and awk scripts that I used to: i) assemble a skin transcriptome of a small Caribbean anole; and ii) perform differential expression and gene set enrichment analysis to identify candidate genes for color and color-pattern in squamate reptiles.

de_novo_and_reference_based_short_read_genome icon de_novo_and_reference_based_short_read_genome

No consensus as of yet has been reached for which genome assembler is 'the' best. As a matter of fact, there probably isn't, with different assemblers performing better for specific data sets or objectives. Here I perform de novo assemblies using multiple algorithms as well as reference based assembly of two Anolis distichus females, and compare their outputs.

phyloflow icon phyloflow

Phylogenetic and gene flow analyses of a small good looking anole.

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