Jonathan Manning's Projects
Simple TALEN assembly R script and associated files
Conda recipes for the bioconda channel.
A conda-smithy repository for cheetah3.
A conda-smithy repository for conda-forge-pinning.
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Pipeline to fetch metadata and raw FastQ files from public and private databases
just for fun
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
Classic hello world script in Nextflow language
A conda-smithy repository for hnswlib.
A basic make-based pipeline for Illumina array data, from raw to interactive visualisations
integrated RNA-seq Analysis Pipeline
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
Testing building mulled containers for multi-requirement tools.
A conda-smithy repository for multicore-tsne.
Aggregate results from bioinformatics analyses across many samples into a single report.
A DSL for data-driven computational pipelines
Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
Code and files for the main nf-core website.
Repository to host tool-specific module files for the Nextflow DSL2 community!
A tool for accurately detecting actively translating ORFs from Ribo-seq data
Scripts for using scanpy
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
Detect doublets in single-cell RNA-seq data
Shiny apps for NGS etc based on reusable components created using Shiny modules
Infrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud
SingleCellNet: classify single cells across species and platforms