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cardio-mesh2pgraph

Ping Lab Intern Project, Summar, 2022: :octocat: Mapping MeSH (ICD codes) to molecular mechanism through protein-protein co-occurance graph -toward high precission medicine

cardio-ner-biobert

Ping Lab Intern Project, Summar, 2022: :octocat: Building Named Entity Recognition model with fine tuning BioBERT - a data engineering approach

cardiokg

Ping Lab Intern Project, Summar, 2022: :octocat: Link prediction through Graph Neural Network (GNN) model over the Knowledgegraph in the interface of Cardiovascular Disease (CVD) and Drugs.

caseolap-pipeline

Samir (akre96): Implementation of the caseOLAP pipeline for mapping relationships between oxidative stress and drugs.

caseolap-protein-to-cvd-categories

Match UnitRef Protein IDs to CVD disease categories with their corresponding CaseOLAP scores

covidgraph-cvd-age

Introduction to the project "Exploration of Covid Graph with CVD association" and important references (Summer and Fall of 2020)

covidgraph-cvd-drug

Introduction to the project "Covid Graph exploration with CVD and Drug association" and important references. (Summer and winter of 2020)

covidgraph-cvdentities

:rocket: COVID19 Knowledgegraph Exploration with CV Entities (e.g., ICD, MeSH, Pathways, Proteins, Genes) by Maya Gupta (Summer and Fall 2020) :mortar_board:

cvd-pathway-map-kg

drug-target-graph

:octocat: Documentation and starter code for drug-target-graph implementing CompoundDB4j.

drugbank-to-node-list-csv

creates a csv file with all of the cardiovascular drugs and all of their respective categories

engineering-protein-graph-data

By Irsyad: :octocat: The project documentation and codes in the study of ion-channel in OS-CVD categories implementing graph data API. Summer 2021.

engineering_chemical_graph_data

BY Joseph: :octocat: The project documentation and codes in study of ion-channels over CVD and OS categories.

heart_caseolap_eda

Exploratory data analysis of CaseOLAP scores of cardiac proteins.

icd-11-visualizer

info

Dibakar: Pinglab Intern Info

mesh2molecules

:rocket: Exploration of Molecular Mechanism following MeSH Descriptors by JASON (Wangjie Zheng), (Summer and Fall 2020) :mortar_board:

multi-omics-proteomics-integration

This repository contains the code and input data for the multi-omics proteomics integration project.

networkanalysis

:rocket: NetworkAnalysis by Raghava

nlp-congenital_heart_defects

A Natural Language Processing project for automatically identifying which type of congenital heart defect is being described in a clinical case report. Created by Jun Bae in Summer 2020 while working with the Ping Lab (UCLA).

os_cvd_project

By Aaruchi: :octocat: A documentation for Oxidative Stress and CVD

oxidative-stress-knowledge-graph

pig-proteomics-database

Building a bioinformatics tool for generating a more reliable protein sequence database for Sus scrofa cardiac proteomics studies

pinglab-intern.github.io

Documentation

project-docs

By Anirudh: :octocat: A study of Network and Graph in DRKG for the association of Cardiovascular Disease with Drugs and Pathways by Anirudh Eranki (Fall 2020)

project-docs-by-nick

Exploration of covidgraph for the association of Covid-19 with Cardiovascular Diseases and Age Group by Nic Chung (Fall 2020)

ptc_data_extraction

Extract disease data from PubTator Central for a given query (in this case, 'heart failure'). Link each disease with PMID and MESH ID for use in later projects.

pubtator-api-wrapper

Functions to retrieve and process annotations with PubTator API

raghavadocs

:octocat: Documentation by Raghava

samirdocs

Project Documentation for Samir Akre's Fall Rotation in the Ping Lab