phyden Goto Github PK
Name: Patrick Hyden
Type: User
Company: Austrian Agency for Health and Food Safety
Bio: Bioinformatics
Location: Vienna, Austria
Patrick Hyden's Projects
abr_combine
cgmlst_bootstrap_tree
Script to create bootstrap-trees for categorical numeric data (like cgMLST export of Ridom SeqSphere)
compleconta
completeness contamination estimation using eggnog-profiles
django-dashboard-atlantis-dark
Django Dashboard - Atlantis Lite (Dark Version) | AppSeed
mtbseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
phendb
A web application and computational pipeline for predicting microbial traits based on comparative genomics
phenotrex
Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn
scraping_mlst
serogroup_cgmlst
a python script to classif bacterial isolates to serogroups/serotypes by specific geneotype patterns
simultaneous_basecall_mk1c
workaround for simultaneous basecalling at MinIon Mk1C and backup script
wf-artic
ARTIC SARS-CoV-2 workflow and reporting
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