phgenomics-singularity Goto Github PK
Name: Public Health Genomics
Type: Organization
Bio: Dedicated to making available open source tools for microbial genomics in Singularity containers
Location: Melbourne, Australia
Public Health Genomics's Projects
abricate
An abricate singularity recipe
abricate_k
amrfinderplus
A singularity recipe for AMRfinderplus
assemblers
chewbbaca_singularity
ete3
A Singularity container for ete3 (3.1.1), including other python3 modules for generation and analysis of trees
hltools
A Singularity recipe for samtools, bcftools, minimap2, bwa, and seqtk
iqtree
mash_kmc
meningotype
Singularity container for meningotype
mlst
Singularity container for MLST
multi_assembler_singularity
ngmaster
Singularity container for NGMASTER
pagit
A pagit singularity container
prokka
roary
A container for roary
seqtk
seqtk singulairty container
shovill
A shovill singularity recipe
sistr
A Singularity recipe for sistr --- a tool for Salmonella typing
snippy
stacks
Singularity container for STACKS
tbprofiler
A singularity container for TB-profiler
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