Comments (3)
This particular bit has been removed, which means in theory it should be fine...
However, the helper function used in this report (batchCorrectionTest) is still expecting the dilution series to filter which features are passing dilution. I have removed these bits (see 3e259e9), which means now no filtering by dilution series should be done before (hence will work without dilution series). Will close after properly testing.
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Does this imply that features should be filtered on the LR before batch correction?
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To make it work for datasets without linearity reference - this has to be removed or made optional. What I will do before closing is try to refactor it a bit to be like the other reports - copy the dataset, and do an updateMasks(). The updateMasks method should handle flexibly whether or not we have LinearityReferences I think (if not then it will haha).
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Related Issues (20)
- Create new Targetlynx QC functions, from Caroline's existing notebook.
- Create new MSTargetedDataset
- Create new branch for tasks
- ImportError: cannot import name 'interp' from 'scipy' HOT 2
- Deprecation warning due to numpy.matlib on multivariateUtilities HOT 1
- Improvements to batch correction module - specify correction sample. HOT 2
- Improve plotting functions - choice of color and general feature plots HOT 1
- Separate 'Feature ID' from 'Chemical/Compound' IDs and names
- Add unittests and test data for Bruker ivDr version 2
- Failure reading NMR data from different windows drives HOT 1
- Missing xlrd dependency as part of installation
- how to access the actual spectral data for further analysis: normalization/scaling, PCA, PLS, STOCSY, etc. HOT 2
- More flexible precision calculation
- Agreggation of intensity values
- Reports tailored for studies with replicate injections of samples
- Import CSV, MS-DIAL, MZmine HOT 7
- Batch Correction changes all values to 0 HOT 4
- Add new Proteomics Dataset object which extends MSDataset.
- Add sMolESY-profile importer to NMRDataset
- Create new NMRTargetedDataset
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