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backend-monitoring

bibfix

Python scripts for latex bibliography organisation

cafi

Combined Repos from DAIN and Zooming SlowMo

cancer_vsd

cellfinder

Automated 3D cell detection and registration of whole-brain images

czifile

Read Carl Zeiss(r) Image (CZI) files. Forked from https://pypi.org/project/czifile

deepinterpolation

envs

Public repo for conda envs

firefly_laser_control

Making a python GUI to control a laser system

first-contributions

🚀✨ Help beginners to contribute to open source projects

fretzel

Analyse FRET signals in single cells

fri

Python code implementing FRI methods for time series analysis.

isbi_challenges

Playful attempts at ISBI challenge problems past and present

job_scraping

A repo for scraping jobs from jobs.ac.uk

matlab-micromanager

Automatically exported from code.google.com/p/matlab-micromanager

metric

A consistent metric for spike inference from calcium imaging data

micro-manager

Microscope control and image acquisition integrated with ImageJ.

micro-manager-python3

Files for running Micro-manager 2.0 with python 3.6 support

microscope

OpenLabTools Microscope Project

microscopytoolbox

Automatically exported from code.google.com/p/microscopytoolbox

openlabtools

Main repository for the OpenLabTools project.

persim

Distances and representations of persistence diagrams

pycav-library

pychirpz

Python and C++ implementation of the Chirp-Z transform

python-redshirt

Read Redshirt camera format data into NumPy arrays

pytwain

TWAIN library using ctypes bindings

scikit-image

Image Processing SciKit (Toolbox for SciPy)

scipy

Scipy library main repository

scopetek

Python driver for scopetek cameras

sid

Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)