pennchopmicrobiomeprogram Goto Github PK
Type: Organization
Bio: Bioinformatics software for microbiome science
Location: United States of America
pennchopmicrobiomeprogram's Projects
16s_qiime2
Snakemake based 16S QIIME2 pipeline
adonisplus
bacphene
Imports Bacterial Phenotype Data Into R
chop_metadata_checker
decontam
dnabc
Identify DNA barcodes in high-throughput sequencing data files
farmm
Code used to generate the results and figures for the FARMM study.
gutsandcages
A package to calculate power for mouse and rat experimental design
illqc
Process shotgun metagenomic DNA data for quality
its_pipits_brocc
microflowseq
mirix
Quantify the susceptibility of a bacterial community to an antibiotic.
pathwayabundancefinder
A short wrapper for finding presence/absence/abundance of pathways from metagenomic data.
pcmp_its_pipeline
phylogeneticprofiler
A short wrapper for profiling composition of microbial communities from shotgun metagenomic data.
primertrim
Trim primers from reads
rout_tanes_siv_art_microbiome
sampleregistry
Web application to keep track of samples sequenced
seqbackup
shotgunpipeline
tagsequencingpipeline
unassigner
Type strain identification for 16S reads
wfrcwf
zibr
Zero-Inflated Beta Random Effect model
zir
Zero-Inflated (Wilcoxon and Kruskal–Wallis) Rank Test
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