peichao Goto Github PK

2pram-paper

Notebooks accompanying the 2-photon random access mesoscope (2p-RAM) paper

adafruit_tmp006

This is a library for the Adafruit TMP006 Infrared Thermopile Sensor

arduino

open-source electronics prototyping platform

awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

awesome-neuroscience

A curated list of awesome neuroscience libraries, software and any content related to the domain.

aztecretrieval

Bioinformatics repository crawler and updater

bottomupcs

Bottom Up Computer Science

brainardlabtoolbox

Matlab toolbox used on all Brainard Lab machines. May be useful to others.

caiman_matlab

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

calman

Python implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

candle-j

Collaborative Approach for eNhanced Denoising under Low-light Excitation

cofd_nature-commun

Customized code for COFD paper published in Nature Communications

color_vision

color_vision_2p

colortilt

Colortilt psychophysics experiment

computational-neuroscience

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

constrained_foopsi_python

Python implementation of the constrained deconvolution algorithm

continuous_time_ca_sampler

The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.

draw.io

Source to www.draw.io

fissa

A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

helioscan

Microscopy software framework

imagingforflowbit

isetbio

Tools for modeling image systems engineering in the human visual system front end

isi

Code for ISI image acquisition, stimulus presentation, and mouse visual area segmentation.

jrclust

JRCLUST

kilosort

GPU code for spike sorting

klustakwik2

Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures

kwiklib

Shared features between the projects (files, statistics, utils...)

micro-manager

Microscope control and image acquisition integrated with ImageJ.

moco

motion correction