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Name: Christopher Dunn
Type: User
Company: Pacific Biosciences
Location: Menlo Park, CA
Name: Christopher Dunn
Type: User
Company: Pacific Biosciences
Location: Menlo Park, CA
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
Easy command line access to Amazon EC2, S3, SQS, ELB, and SDB (new!)
a long read simulator that can imitate many types of read problems
C++ API & command-line toolkit for working with BAM data
BLASR: The PacBio® long read aligner
Nim library to infer and generate command-line-interfaces
Find all significant local alignments between reads
Support for running DALIGNER (mostly scripts)
Module to determine where repeats are and make soft-masks of said
Alignment-based Scrubbing pipeline
Fast, efficiently stored Trie for Python. Uses libdatrie.
The Dazzler Data Base
Bax File Decoder and Data Compressor
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
FALCON: experimental PacBio diploid assembler
Very temporary storage for largish datafiles
Examples on branches, and a useful place for testing
Build and integration- testing for FALCON
This is one way to install the FALCON packages residing in FALCON-integrate:
DEPRECATED! Switch to FALCON-integrate
run.py etc using pbsmrtpipe instead of pypeFLOW
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
falcon in python3
foo
falcon-unzip in python3
Subset of pitchfork
SDK for GPU accelerated genome assembly and analysis
Gin is a HTTP web framework written in Go (Golang). It features a Martini-like API with much better performance -- up to 40 times faster. If you need smashing performance, get yourself some Gin.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.