Comments (1)
- The CLI now has an option for limiting analysis for GO aspects such as biological process (as already existed for the GUI)
- The CLI option to save the configuration to a file (-S) now works as intended
- The CLI has an option to set the random seed (-seed) (used for resampling-based approaches)
- CLI and GUI options for turning off multifunctionality assessment are removed (now always true).
- CLI option to set “filter non-specific” is removed (always true)
- CLI multiple test correction methods are renamed “FDR” and “FWE”
- CLI: The “Westfall-Young” multiple test correction method is no longer supported
- Support for alternative annotation file formats has been dropped.
- The options that are no longer supported in the CLI are also ignored when present in configuration files
- Default class size limits are now 20 and 200 (rather than 10 and 100).
from erminer.
Related Issues (20)
- Random failures on travis
- Annotation files should not be downloaded to the users home filespace
- Mac users needs to have java SDK not just java. add to documentation
- Getting reports of spontaneous change of permissions for the jar file. Investigate
- Custom gene sets doesn't seem to work on windows
- Consistent failures in appveyor
- Example of non-GO enrichment
- Consider supporting gene2go for automatic gene annotation when gemma is unavailable
- To CRAN
- replace annotation functions with gemmaAPI imports
- Problem installing ermineR HOT 2
- Broken link - Cannot find URL HOT 3
- Permission denied HOT 2
- Is it possible to download the gene to function table without using the statistical procedure in the package?
- I have rJava installed and runned the `chmod +x` command but still wasn't able to get the pathway information that I wanted. HOT 2
- Various bugs/suggestions HOT 4
- Seek java in Windows HOT 1
- Get test cases from ermineJ repo
- Gene list inputs
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from erminer.