paulsengroup Goto Github PK
Type: Organization
paulsengroup's Projects
2021-modle-paper-001-data-analysis
Data analysis code for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions": https://doi.org/10.1186/s13059-022-02815-7
2022-confined-polymer-paper-data-analysis
Data analysis code for: "Association of flexible filaments under different confinement geometries"
2022-mcf10a-cancer-progression
2023-hictk-paper
ci-docker-images
Repository to build and host CI Docker images for various projects
hictk
Blazing fast toolkit to work with .hic and .cool files
hictkpy
Python bindings for hictk: read and write .cool and .hic files directly from Python
hictkr
R bindings for hictk: read .cool and .hic files directly from R
modle
High-performance stochastic modeling of DNA loop extrusion interactions
nchg
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