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brainrender

a python based software for visualization of neuroanatomical and morphological data.

cgat-core

Core functionality of the CGAT code

coronal_hemisphere_annotation_tool

deepslice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

entropy_based_binning

Entropy based binning of discrete variables.

entropy_estimators

Estimators for the entropy and other information theoretic quantities of continuous distributions

grandalf

graph and drawing algorithms framework

hola

Human-like Orthogonal Layout Algorithm

initium_map

inverse_distance_weighting

Interpolation in D-dimensional spaces using inverse distance weighted, k-nearest neighbours

lspopt

Python implementation of a multitaper window method for estimating Wigner spectra for certain locally stationary processes

matplotlib-venn

Area-weighted venn-diagrams for Python/matplotlib

matplotlib_venn_wordcloud

Venn diagrams with word clouds

nest-simulator

The NEST simulator

netgraph

Publication-quality network visualisations in python

network_line_graph

Visualisation to compare different states of a network

networkx

Network Analysis in Python

neuronab

A python module that automatically isolates neurites and potential synapses on immunofluorescence images.

nutil

https://nutil.readthedocs.io/en/latest/

patchseq

pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

psc-constants

Collecting and visualizing information about postsynaptic current curves.

rbm_variants

Restricted Boltzmann machine variants

rectangle-packer

Rectangle packing program

sleepy-python

Automated vigilance state scoring based on LFP or EEG data

slicereg

Registration of 2D sections to a 3D volume

somnotate

Automated polysomnography for experimental animal research

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

the-python-graph-gallery

A website displaying hundreds of charts made with Python

visbrain

A multi-purpose GPU-accelerated open-source suite for brain data visualization