pathogenwatch-oss Goto Github PK
Type: Organization
pathogenwatch-oss's Projects
amr-libraries
The CGPS curated AMR libraries used by Pathogenwatch
amr-search
The Pathogenwatch AMR genotyping and phenotype inference tool
amr-test-libraries
AMR libraries that haven't yet met production-ready standards for Pathogenwatch.
cgmlst-clustering
core-fp
genotyphi
Pathogenwatch implementation of the Genotyphi tool
hclink
Link Pathogenwatch cgMLST profile to Enterobase HierCC clusters
inctyper
The Pathogenwatch inctyping tool, based on plasmidfinder
kleborate
The Pathogenwatch wrapper for Kleborate
mlst
The Pathogenwatch MLST/cgMLST assignment tool
ngono-markers
poppunk2
pw-bactinspector
The Pathogenwatch fork of bactinspector that is Speciator 3.
seroba
speciator
spn-resistance-pbp
PBP resistance assignment for Streptococcus pneumoniae
support
About Pathogenwatch-OSS
tasks
The Pathogenwatch task image build scripts.
typing-databases
The scripts for creating the typing database used by the MLST code.
vista
The Pathogenwatch Vibrio cholerae genotyping tool
website
The main website code for Pathogenwatch
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