Comments (1)
Hi, sorry for the late reply. Yes, still no VCF generated for HERV. It's on my list, but just delayed by other works. I'll try to update soon. The first few columns are chrm
, representative-breakpoint
, left-breakpoint
, right-breakpoint
, TSD
, left-supporting-clip-reads
, right-supporting-clip-reads
, left-supporting-discordant-reads
, right-supporting-discordant-reads
, left-polyA
, right-polyA
, left-read-depth
, right-read-depth
...
This error doesn't affect the final results.
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Related Issues (20)
- Gene list Error HOT 10
- output question HOT 12
- sklearn version? HOT 1
- output vcf HOT 1
- Mosaic calling - missing parameter? HOT 2
- no enough disc support! HOT 1
- Handling duplicates HOT 2
- Issue running locally HOT 1
- Cannot find the target directory HOT 2
- no such option: --bamsnap HOT 7
- Pre-generated Alu database HOT 1
- default slurm script with wrong email HOT 1
- -f: steps to run. (5907 means run all the steps); HOT 1
- long read support with chm13 HOT 3
- Using the code in github still doesn't solve the problem HOT 2
- Questions about the output file HOT 3
- visual inspection using IGV
- Merge clip and disc step error HOT 12
- Sporadic inconsistent errors with xtea_long HOT 5
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