Comments (1)
This is insertion, which means they are absent from the genome. Here, SVLEN
is the insertion length. In general, we think one insertion will have one breakpoint on the genome, however for TE insertions the two strands usually do not break at the exact same location (you can search for target-site-duplication in L1 retrotransposon
to understand more). Thus, there are two breakpoints reported here (POS and END). Hope this helps.
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Related Issues (20)
- x_TEA_main.py: error: no such option: --bamsnap HOT 2
- Very long length of L1 insertion HOT 1
- Long_reads: File detailing which reads show transductions of deletions HOT 1
- temp files burst out HOT 2
- Possible to merge TE sites and do genotyping in each sample? HOT 1
- Alu output didn't go through filter step? HOT 2
- xTea_long getting stuck, no errors, during wtpoa-cns, running HG38 HOT 2
- xTea output file understanding HOT 5
- About the case-control analysis in Illumina Short-read WGS Data HOT 3
- filtering HOT 4
- Will the coverage of BAM files affect the xTea results? HOT 3
- Input file for pseudogene insertion calling HOT 1
- visual inspection using IGV
- Merge clip and disc step error HOT 12
- Sporadic inconsistent errors with xtea_long HOT 5
- WES issues HOT 1
- interpretation of GENE_INFO in output file HOT 1
- Long read cannot find temp files HOT 1
- xTea Long_read SyntaxWarning HOT 6
- line 1133, IOError: [Errno 2] No such file or directory: 'null' HOT 1
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