Comments (1)
Do you mean you have a newly assembled draft genome, and you are wondering whether xTea could be applied on this assembled genome?
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Related Issues (20)
- Very long length of L1 insertion HOT 1
- Long_reads: File detailing which reads show transductions of deletions HOT 1
- temp files burst out HOT 2
- Possible to merge TE sites and do genotyping in each sample? HOT 1
- Alu output didn't go through filter step? HOT 2
- xTea_long getting stuck, no errors, during wtpoa-cns, running HG38 HOT 2
- xTea output file understanding HOT 5
- About the case-control analysis in Illumina Short-read WGS Data HOT 3
- filtering HOT 4
- Will the coverage of BAM files affect the xTea results? HOT 3
- Input file for pseudogene insertion calling HOT 1
- Issue with Somatic Insertion Genotyping in Case-Control Mode HOT 3
- what's the meaning of "REF_REP=Fall_in_Alu_copy_2.5"? HOT 1
- Cannot find the target directory: xTea/xtea/genotyping/trained_model_ssc_py2_random_forest_two_category.pkl. HOT 3
- How to extract insertion sequences in short read mode? HOT 1
- About "all_ins_seqs.fa" not found
- ERROR: No matching distribution found for deep-forest HOT 1
- Does xtea only detect some subfamilies of TEs in hg38/19? HOT 1
- Dockerfile: RUN rm -rf xTea HOT 3
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